Basic Information
VIS ID
TVIS10006365
Fusion event
HBV-chr3 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1829
Integrated sequence
GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
End
117606720 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/756353; hsa-mir-12124/Downstream/2477844;
Nearby gene
LINC00901(-674482) ;
Downstream sequence
AATGACACATCTAGTCT
Junction sequence
NGCNCCNTGCAACTTTTTCAAATGACACATCTAGTCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate