VISDB Viral Integration Site DataBase

VIS ID

TVIS10006379

Fusion event

HBV-GRIK2 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1829

Integrated sequence

GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG

Chromosome

chr6

Cytoband

q16.3

Reference genome

Start

End

101585725 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1303 ; hsa-mir-3122 ; hsa-mir-3123 ; hsa-mir-3201 ; hsa-mir-3675-5p ; hsa-mir-3913-5p ; hsa-mir-3925-5p ; hsa-mir-450a-1-3p ; hsa-mir-450b-3p ; hsa-mir-4791 ; hsa-mir-5002-5p ; hsa-mir-5089-5p ; hsa-mir-6513-5p ; hsa-mir-6728-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6803-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6890-5p ; hsa-mir-7110-5p ; hsa-mir-769-3p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-10398/Upstream/2461029; hsa-mir-1202/Downstream/5198400;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/182627, chr6-CpG: 79/Downstream/3273519

Upstream sequence

GGAAAAAGGTGACACAT

Junction sequence