VISDB Viral Integration Site DataBase

VIS ID

TVIS10006426

Fusion event

HBV-DLG1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1819

Integrated sequence

GAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGA| |TGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGG

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

197076755 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-218-5p ; hsa-mir-9-3p

Nearest miRNA

hsa-let-7g/Upstream/1194360; hsa-mir-4797/Downstream/217123;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/46252, chr3-CpG: 115/Downstream/220801

Nearest cancer related gene

DLG1(TSG, No orient, 0)

Upstream sequence

GTACAAAGGCCCAGCCTAGCA

Junction sequence