Basic Information
VIS ID
TVIS10006433
Fusion event
HBV-chr10 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1813
Integrated sequence
GACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGG| |AAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCA
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
End
109779347 (Hg38)
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-107/Upstream/5510942; hsa-mir-202/Downstream/1118743;
Nearby gene
XPNPEP1(+85418) ;
Upstream sequence
TTTGGGCCATTACAGTATCAGC
Junction sequence
TTTGGGCCATTACAGTATCAGCTGCTGGTGAACAGACCAATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate