GTF3C5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006456
Fusion event
HBV-GTF3C5 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh38
Start
133048728 (Hg38)
End
133048728 (Hg38)
Location type
Intron
Target gene
GTF3C5
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-877-3p ; hsa-mir-652-3p ; hsa-mir-222-3p ; hsa-let-7a-5p
Nearest miRNA
hsa-let-7a-1/Upstream/102957; hsa-mir-126/Downstream/3268;
Nearest TSS
ENST00000422679/Upstream/17710; ENST00000435745/Downstream/5175;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/17565, chr9-CpG: 60/Downstream/22471
Upstream sequence
attgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaagaaaaCAGCACTTGTCAGCACTGCCGCCCCTGGCACTAGATGGCAGCAGCA
Downstream sequence
TCTGAGTTACTGCTCTGCCCTGTGGGCCAGTGGGAAGCTGTTTCCAGCCCCTGGGGTAAAATGAGGGAGGAGGGCCAGCTGCCCTCGGGCCCCAAGGCCC
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate