Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006468
Fusion event
HBV-ALB integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
3177
Integrated sequence
AGGCAGTAGTCAGAACAGGGTTTACTGTTCCTGAACTGGAGCCACCAGCAGGGAAATACAGGCCTCTCACTCTGGGATCTTGCAGAGTTTGGTGGAAGGT| |TGTGG
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
Start
End
73404654 (Hg38)
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12113/Upstream/7127726; hsa-mir-1243/Downstream/3168914;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/145241, chr4-CpG: 20/Downstream/215673
Upstream sequence
CTAAGGAAAGTGCAAAG
Junction sequence
CTAAGGAAAGTGCAAAGTAGTACAAAGACCTTTAATC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.