VISDB Viral Integration Site DataBase

VIS ID

TVIS10006471

Fusion event

HBV-A1BG integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1808

Integrated sequence

CAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGC| |CATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTT

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

58353102 (Hg38)

Location type

Exon

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1273g-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-1288-3p ; hsa-mir-661 ; hsa-mir-4645-3p ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-4772-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5582-5p

Nearest miRNA

hsa-let-7e/Upstream/18351; hsa-mir-10394/Downstream/33668;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2062, chr19-CpG: 168/Downstream/2929

Downstream sequence

GAGTCTCCAGGTGGGC

Junction sequence