VISDB Viral Integration Site DataBase

VIS ID

TVIS10006475

Fusion event

HBV-ANO6 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1804

Integrated sequence

GTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAG| |CAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGG

Chromosome

chr12

Cytoband

q12

Reference genome

Start

End

45245364 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-192-5p ; hsa-mir-615-3p ; hsa-mir-182-5p ; hsa-mir-10a-5p ; hsa-let-7a-5p ; hsa-mir-3620-3p ; hsa-mir-218-5p ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-500b-3p ; hsa-mir-3908

Nearest miRNA

hsa-mir-1244-3/Upstream/2921505; hsa-let-7i/Downstream/1942448;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/28395, chr12-CpG: 72/Downstream/481579

Upstream sequence

TTAATAATTGTTAATATA

Junction sequence