VISDB Viral Integration Site DataBase

VIS ID

TVIS10006477

Fusion event

HBV-SNU13 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1828

Integrated sequence

CGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTT| |GCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGA

Chromosome

chr22

Cytoband

q13.2

Reference genome

Start

End

41681252 (Hg38)

Location type

Intron

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-23b-3p ; hsa-mir-92a-3p ; hsa-mir-5010-5p ; hsa-mir-6124 ; hsa-mir-4525 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-766-5p ; hsa-mir-3202 ; hsa-mir-2467-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-3179 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6873-5p ; hsa-mir-197-3p ; hsa-mir-4733-3p ; hsa-mir-1226-3p ; hsa-mir-5588-3p ; hsa-mir-6507-3p

Nearest miRNA

hsa-mir-1281/Upstream/428202; hsa-let-7a-3/Downstream/219692;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/14254, chr22-CpG: 42/Downstream/804

Upstream sequence

TCAAAATTTATTTTTGTTCTTA

Junction sequence