VISDB Viral Integration Site DataBase

VIS ID

TVIS10006498

Fusion event

HBV-ZNF711 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1792

Integrated sequence

GGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGC| |AGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAA

Chromosome

chrX

Cytoband

q21.1

Reference genome

Start

End

85244654 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-615-3p ; hsa-mir-151a-3p ; hsa-mir-218-5p ; hsa-mir-548c-3p ; hsa-mir-34a-3p ; hsa-mir-142-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548k ; hsa-mir-548l ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-3157-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-5590-3p ; hsa-mir-548av-5p ; hsa-mir-548ay-5p ; hsa-mir-8054 ; hsa-mir-548bb-5p ; hsa-mir-188-3p ; hsa-mir-5692a ; hsa-mir-5007-3p ; hsa-mir-5579-5p ; hsa-mir-4666b ; hsa-mir-5700 ; hsa-mir-802 ; hsa-mir-543 ; hsa-mir-3143 ; hsa-mir-95-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-3140-3p ; hsa-mir-3149 ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-5701 ; hsa-mir-6847-3p ; hsa-mir-6512-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-4691-3p ; hsa-mir-4803 ; hsa-mir-569 ; hsa-mir-551b-5p ; hsa-mir-5680 ; hsa-mir-212-3p ; hsa-mir-132-3p

Nearest miRNA

hsa-let-7f-2/Upstream/1018826; hsa-mir-105-1/Downstream/591126;

Nearest TSS

Nearest CpG islands

chrX-CpG: 72/Target, None/Upstream, None/Downstream

Upstream sequence

AACCTTTGGAATGCGCGAGGG

Junction sequence