VISDB Viral Integration Site DataBase

VIS ID

TVIS10006510

Fusion event

HBV-SPAG16 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1775

Integrated sequence

GAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCG| |CGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAG

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

214293678 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-4713-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-6507-3p ; hsa-mir-6828-5p ; hsa-mir-651-3p ; hsa-mir-3662

Nearest miRNA

hsa-mir-10b/Upstream/535519; hsa-mir-1244-1/Downstream/3606835;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1008976, chr2-CpG: 110/Downstream/515593

Downstream sequence

GTGGAGCTCATGGTTTGCT

Junction sequence