VISDB Viral Integration Site DataBase

VIS ID

TVIS10006530

Fusion event

HBV-BPNT1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1819

Integrated sequence

GAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGA| |TGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGG

Chromosome

chr1

Cytoband

q41

Reference genome

Start

End

220059053 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-1289 ; hsa-mir-1827 ; hsa-mir-383-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-5001-3p ; hsa-mir-4497 ; hsa-mir-4437 ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3182 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-335-5p ; hsa-mir-665 ; hsa-mir-6894-3p ; hsa-mir-455-3p ; hsa-mir-6771-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-3622b-5p ; hsa-mir-7160-5p ; hsa-mir-4746-3p ; hsa-mir-4763-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-17-3p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-5588-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-5197-5p ; hsa-mir-25-5p ; hsa-mir-4327 ; hsa-mir-4537 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p

Nearest miRNA

hsa-mir-101-1/Upstream/7981368; hsa-mir-1182/Downstream/58800;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12334, chr1-CpG: 63/Downstream/34919

Upstream sequence

TGGATTGTGGTTTTTCTAG

Junction sequence