Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006548
Fusion event
HBV-LOC145783 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1807
Integrated sequence
CCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAG| |CCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGT
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
Start
End
56886666 (Hg38)
Location type
Exon
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/1513632; hsa-mir-11181/Downstream/2284517;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/152714, chr15-CpG: 57/Downstream/413
Upstream sequence
CATAATATAGCACTTTCT
Junction sequence
CATAATATAGCACTTTCTTGCGCAGACCAATTTATGCC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.