Basic Information
VIS ID
TVIS10006555
Fusion event
HBV-chr11 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1820
Integrated sequence
AGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGAT| |GTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGA
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh38
Start
29116520 (Hg38)
End
29116520 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/638972; hsa-let-7a-2/Downstream/5825317;
Nearest TSS
ENST00000527297/Upstream/214239; ENST00000530960/Downstream/43436;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1005846, chr11-CpG: 25/Downstream/899605
Nearby gene
MIR8068(-638972) ; KCNA4(+893220) ;
Upstream sequence
TGCTCTCCTACACAGTAAGCAA
Junction sequence
TGCTCTCCTACACAGTAAGCAATGCTTACTGTGTAGGANANC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate