VISDB Viral Integration Site DataBase

VIS ID

TVIS10006556

Fusion event

HBV-HIBADH integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1694

Integrated sequence

AGCGAAGTGCACACGGTCCGGCAGATGAGAAGGCACAGACGGGGAGTCCGCGTAAAGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGG| |GGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAG

Chromosome

chr7

Cytoband

p15.2

Reference genome

Start

End

27605977 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-627-3p ; hsa-mir-3124-3p ; hsa-mir-942-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-520f-5p ; hsa-mir-1228-3p

Nearest miRNA

hsa-mir-1183/Upstream/436414; hsa-mir-10399/Downstream/2074757;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/353399, chr7-CpG: 54/Downstream/56624

Downstream sequence

CAAACAAGTTATTCATCCCA

Junction sequence