VISDB Viral Integration Site DataBase

VIS ID

TVIS10006568

Fusion event

HBV-NFE2L1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

q21.32

Reference genome

Start

End

48056784 (Hg38)

Location type

uncertain

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-342-5p ; hsa-mir-18a-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-185-5p ; hsa-mir-30c-5p ; hsa-mir-99a-5p ; hsa-mir-92a-3p ; hsa-mir-1260b ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-6826-3p ; hsa-mir-421 ; hsa-mir-7158-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-4709-5p ; hsa-mir-3912-5p ; hsa-mir-8057 ; hsa-mir-106a-3p ; hsa-mir-198 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4634 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6812-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6892-3p ; hsa-mir-3607-5p ; hsa-mir-1207-5p ; hsa-mir-1226-5p ; hsa-mir-1249-5p ; hsa-mir-1273f ; hsa-mir-1909-3p ; hsa-mir-2682-5p ; hsa-mir-31-5p ; hsa-mir-34a-5p ; hsa-mir-34b-5p ; hsa-mir-34c-5p ; hsa-mir-3616-3p ; hsa-mir-3688-5p ; hsa-mir-3714 ; hsa-mir-4419a ; hsa-mir-4436b-3p ; hsa-mir-4470 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-449c-5p ; hsa-mir-4510 ; hsa-mir-4519 ; hsa-mir-4534 ; hsa-mir-4632-5p ; hsa-mir-4708-3p ; hsa-mir-4710 ; hsa-mir-4721 ; hsa-mir-4763-3p ; hsa-mir-5693 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6514-5p ; hsa-mir-6721-5p ; hsa-mir-6722-3p ; hsa-mir-6735-5p ; hsa-mir-6760-5p ; hsa-mir-6782-5p ; hsa-mir-6797-5p ; hsa-mir-6809-5p ; hsa-mir-6838-5p ; hsa-mir-6879-5p ; hsa-mir-7112-5p ; hsa-mir-7843-5p ; hsa-mir-8082 ; hsa-mir-3617-5p ; hsa-mir-4540 ; hsa-mir-548c-3p ; hsa-mir-548u ; hsa-mir-641 ; hsa-mir-6838-3p ; hsa-mir-7161-5p

Nearest miRNA

hsa-mir-10226/Upstream/19537; hsa-mir-10a/Downstream/99643;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/7913, chr17-CpG: 28/Downstream/2503

Upstream sequence

TAGAGAAGACAGGTGGTGTGTGGGGTGGACCTGAATTTCTGTTTTGGGTTGGGGTCTGTAAGTCACAGTGGCTGAGCCTTGGAAGGGGGGAGTGGAAAGC

Downstream sequence

AGCAGATGCAGAATGGCCAGGCCGTGGCAACAGACAGTGCAAGGGAGGCAGAGCATGTAGCATCTTCCTGCTTGCTTCAGGACTCTTTCACTCTCTTCTG