Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006576
Fusion event
HBV-ATP2C1 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
Start
End
130938818 (Hg38)
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7g/Upstream/1666575; hsa-mir-1224/Downstream/1047037;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/44177, chr3-CpG: 40/Downstream/87726
Upstream sequence
CCAAGTGAGTGATATGACCCACTGGACCACTAACTGGACCTTCTTGCGTCTTTAAGAATGTGTCAGATATGTGGAGTGCCCTACTTCAGAAGGATTCCTG
Downstream sequence
CAAATAGTATCACTATGTATGGAAGACCTTAGTACCTTGTTCTCTTTGATCACTAGAAAGCCCATGTTTTCAAAAAACACCACAAAATTGTGATTTTAAC
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.