hsa-mir-4659a-3p _LIHC.png
hsa-mir-892b _LIHC.png
hsa-mir-4434 _LIHC.png
MECP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006595
Fusion event
HBV-MECP2 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1821
Integrated sequence
GAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATG| |TATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGAT
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
End
154096037 (Hg38)
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7f-2/Upstream/76048; hsa-mir-1184-1/Downstream/354283;
Upstream sequence
ATGTTACTACTGAGGCCGTA
Junction sequence
ATGTTACTACTGAGGCCGTATTGCATGGTGCTGGNGCGCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate