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VISDB
Viral Integration Site DataBase
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TVIS10006595
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006595
Fusion event
HBV-MECP2 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1821
Integrated sequence
GAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATG| |TATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGAT
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh38
Start
154096037 (Hg38)
End
154096037 (Hg38)
Location type
Intron
Fragile sites / regions
FRAXE
;
FRAXF
Target gene
MECP2
miRNAs that regulate target gene
hsa-mir-802
;
hsa-mir-155-5p
;
hsa-mir-199a-3p
;
hsa-mir-195-5p
;
hsa-mir-19a-3p
;
hsa-mir-122-5p
;
hsa-mir-212-3p
;
hsa-mir-199a-5p
;
hsa-mir-124-3p
;
hsa-mir-148b-3p
;
hsa-mir-425-3p
;
hsa-mir-331-3p
;
hsa-mir-92a-3p
;
hsa-mir-340-5p
;
hsa-mir-181c-5p
;
hsa-mir-3156-3p
;
hsa-mir-4301
;
hsa-mir-4279
;
hsa-mir-30a-3p
;
hsa-mir-432-5p
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-5591-3p
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-1233-3p
;
hsa-mir-1253
;
hsa-mir-3162-3p
;
hsa-mir-5197-3p
;
hsa-mir-6501-3p
;
hsa-mir-660-5p
;
hsa-mir-6891-5p
;
hsa-mir-3173-3p
;
hsa-mir-4428
;
hsa-mir-664a-5p
;
hsa-mir-4794
;
hsa-mir-892b
;
hsa-mir-548ao-3p
;
hsa-mir-653-5p
;
hsa-mir-527
;
hsa-mir-518a-5p
;
hsa-mir-6864-5p
;
hsa-mir-6126
;
hsa-mir-4312
;
hsa-mir-1252-5p
;
hsa-mir-138-1-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-17-5p
;
hsa-mir-106a-5p
;
hsa-mir-20b-5p
;
hsa-mir-519d-3p
;
hsa-mir-526b-3p
;
hsa-mir-93-5p
;
hsa-mir-19b-3p
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-6875-3p
;
hsa-mir-6749-3p
;
hsa-mir-4313
;
hsa-mir-942-5p
;
hsa-mir-3121-5p
;
hsa-mir-1250-3p
;
hsa-mir-130a-3p
;
hsa-mir-1286
;
hsa-mir-2278
;
hsa-mir-3140-3p
;
hsa-mir-4433a-3p
;
hsa-mir-4433b-3p
;
hsa-mir-4468
;
hsa-mir-4481
;
hsa-mir-4722-5p
;
hsa-mir-4745-5p
;
hsa-mir-6165
;
hsa-mir-6511b-5p
;
hsa-mir-656-5p
;
hsa-mir-659-3p
;
hsa-mir-6811-5p
;
hsa-mir-8083
;
hsa-mir-873-5p
Nearest miRNA
hsa-let-7f-2/Upstream/76048; hsa-mir-1184-1/Downstream/354283;
Nearest TSS
ENST00000429181/Upstream/1257;
ENST00000463296/Downstream/932;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/75833
,
chrX-CpG: 108/Downstream/1073
Upstream sequence
ATGTTACTACTGAGGCCGTA
Junction sequence
ATGTTACTACTGAGGCCGTATTGCATGGTGCTGGNGCGCA
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Sample Information
×
Sample name
13
Sample type
Tumor
Age
17
Gender
Female
CpG Island Information
×
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