Basic Information
VIS ID
TVIS10006604
Fusion event
HBV-chr20 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1785
Integrated sequence
CGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCC| |AGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCG
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh38
Start
60862076 (Hg38)
End
60862076 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/297451; hsa-mir-1-1/Downstream/1091470;
Nearest TSS
ENST00000382410/Upstream/47865; ENST00000441660/Downstream/215740;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/774171, chr20-CpG: 34/Downstream/105376
Nearby gene
MIR548AG2(-297451) ; LINC01718(+216987) ;
Downstream sequence
GATGCTGATTCAGTT
Junction sequence
GNGTTTGTATTAGGAGGCTGCAGATGCTGATTCAGTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate