Basic Information
VIS ID
TVIS10006627
Fusion event
HBV-chr5 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh38
Start
165964705 (Hg38)
End
165964705 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/5479255; hsa-mir-103a-1/Downstream/2201140;
Nearest TSS
ENST00000502646/Upstream/615675; ENST00000520075/Downstream/163793;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2458765, chr5-CpG: 17/Downstream/1013774
Nearby gene
LINC01947(+940516) ;
Upstream sequence
actgtgtgatattcccctccagtgcccatatgttctgactgttcaactcccacttatgagtgacaacatgtggtgtttggttttctgttcctgtgtcagt
Downstream sequence
ttgctgaggatgatggtttccaggttcatccatgtccctgcaaaggacatggactcattctttttatggcgcatagtattccacagtgtatatgtgccac
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate