Basic Information
VIS ID
TVIS10006629
Fusion event
HBV-LOC107986022 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1739
Integrated sequence
GTCCGCGTAAAGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGA| |TTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGA
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
End
117825136 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/974769; hsa-mir-12124/Downstream/2259428;
Nearby gene
LINC00901(-892898) ;
Downstream sequence
TGTTAGGTCATCATTTTT
Junction sequence
TGTATTTAAAGACTGGGAGGTGTTAGGTCATCATTTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate