VISDB Viral Integration Site DataBase

VIS ID

TVIS10006641

Fusion event

HBV-ST6GAL1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1769

Integrated sequence

CGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGAC| |GTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTG

Chromosome

chr3

Cytoband

q27.3

Reference genome

Start

End

187060777 (Hg38)

Location type

Intron

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-492 ; hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-18a-3p ; hsa-mir-218-5p ; hsa-mir-8081 ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-526b-5p ; hsa-mir-924 ; hsa-mir-5009-3p

Nearest miRNA

hsa-let-7g/Upstream/274000; hsa-mir-28/Downstream/1628004;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/129463, chr3-CpG: 63/Downstream/78362

Upstream sequence

TTGGCAGCTAGAAGTTGAAATT

Junction sequence