Basic Information
VIS ID
TVIS10006644
Fusion event
HBV-chr5 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1829
Integrated sequence
GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh38
Start
143874163 (Hg38)
End
143874163 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/194192; hsa-mir-103a-1/Downstream/5188150;
Nearest TSS
ENST00000502646/Upstream/61895; ENST00000512467/Downstream/296467;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/468657, chr5-CpG: 30/Downstream/296212
Nearby gene
HMHB1(-53444) ; YIPF5(+288054) ;
Downstream sequence
ATAAATCTTGCTGTAAGGAAAC
Junction sequence
ATCATCATGCAACTTTTTCAATAAATCTTGCTGTAAGGAAAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate