VISDB - VIS Detail

Expression analysis of TCGA samples

Basic Information

VIS ID

TVIS10006652

Fusion event

HBV-ENTPD1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Tumor

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

27453547

Virus Sequence

Virus name

HBV

Reference genome

V01460.1

Host Sequence

Chromosome

chr10

Cytoband

q24.1

Reference genome

GRCh38

Start

95731408 (Hg38)

End

95731408 (Hg38)

Location type

Intron

Fragile sites / regions

FRA10D

Target gene

ENTPD1

miRNAs that regulate target gene

hsa-mir-346 ; hsa-mir-331-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-361-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-654-3p ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-6838-5p ; hsa-mir-142-3p ; hsa-mir-155-5p ; hsa-mir-374a-3p ; hsa-mir-4291 ; hsa-mir-511-5p ; hsa-mir-633 ; hsa-mir-6503-3p ; hsa-mir-6830-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-3617-3p ; hsa-mir-624-5p ; hsa-mir-4694-3p ; hsa-mir-6833-5p ; hsa-mir-3190-3p ; hsa-mir-671-5p ; hsa-mir-891b ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-5682 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-661 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-6514-5p ; hsa-mir-6871-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-508-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p

Nearest miRNA

hsa-mir-107/Upstream/6138581; hsa-mir-1287/Downstream/332907;

Nearest TSS

ENST00000439456/Upstream/19629; ENST00000461927/Downstream/24244;

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/37152, chr10-CpG: 69/Downstream/176078

Junction sequence

TGTAGCCGACCCTCTG

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

Reference

Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.