Basic Information
VIS ID
TVIS10006663
Fusion event
HBV-chr11 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1810
Integrated sequence
AGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCA| |TGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCC
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
End
46715331 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/263442; hsa-let-7a-2/Downstream/37794;
Nearby gene
ZNF408(-9370) ; F2(+3861) ;
Downstream sequence
CCCAGCTATTTGGGAG
Junction sequence
ATAAATTGGTCTNCGCACCACCCAGCTATTTGGGAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate