Basic Information
VIS ID
TVIS10006673
Fusion event
HBV-chr13 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1821
Integrated sequence
GAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATG| |TATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGAT
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh38
Start
111000244 (Hg38)
End
111000244 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1267/Upstream/659215; hsa-mir-4502/Downstream/2262676;
Nearest TSS
ENST00000623511/Upstream/84240; ENST00000422994/Downstream/95594;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/9930, chr13-CpG: 20/Downstream/17941
Nearby gene
ANKRD10(-85137) ; ARHGEF7(+115282) ;
Upstream sequence
AGCTGNGAAGTCATGCAGC
Junction sequence
AGCTGNGAAGTCATGCAGCTAATGATGGTANTCATGCATAATGATGGTANTCATGCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate