Basic Information
VIS ID
TVIS10006676
Fusion event
HBV-chr10 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1798
Integrated sequence
GAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACA| |GCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCG
Host Sequence
Chromosome
chr10
Cytoband
q23.32
Reference genome
GRCh38
Start
91904675 (Hg38)
End
91904675 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/2311848; hsa-mir-1287/Downstream/4159640;
Nearest TSS
ENST00000439456/Upstream/106363; ENST00000610263/Downstream/3456;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/17039, chr10-CpG: 100/Downstream/3570
Nearby gene
TNKS2(-39200) ; FGFBP3(+1912) ;
Downstream sequence
CAGTGCAAAATATTTTCTG
Junction sequence
GAGGCTGTAGGCATAAATTGCAGTGCAAAATATTTTCTG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate