Basic Information
VIS ID
TVIS10006680
Fusion event
HBV-chrX integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1800
Integrated sequence
GAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGC| |CTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGC
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh38
Start
83326924 (Hg38)
End
83326924 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/4425675; hsa-mir-105-1/Downstream/898828;
Nearest TSS
ENST00000429181/Upstream/2071430; ENST00000373200/Downstream/181337;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2322930, chrX-CpG: 63/Downstream/181639
Nearby gene
POU3F4(+181336) ;
Upstream sequence
GCATGGGAGAACTGAGTTAGC
Junction sequence
GCATGGGAGAACTGAGTTAGCACCAATTTATGCCTACAGCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate