VISDB Viral Integration Site DataBase

VIS ID

TVIS10006691

Fusion event

HBV-CSMD2 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1821

Integrated sequence

GAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATG| |TATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGAT

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33546240 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-3941 ; hsa-mir-125b-2-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-495-5p ; hsa-mir-4650-5p ; hsa-mir-1972

Nearest miRNA

hsa-mir-12136/Upstream/213748; hsa-mir-101-1/Downstream/1123359;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/73513, chr1-CpG: 20/Downstream/78765

Downstream sequence

AATCCCATTATTTTTCAGGGA

Junction sequence