VISDB Viral Integration Site DataBase

VIS ID

TVIS10006695

Fusion event

HBV-TRIM66 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1801

Integrated sequence

AGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCC| |TAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCT

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

8636670 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-6800-3p ; hsa-mir-6739-3p ; hsa-mir-375 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-526b-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-4635 ; hsa-mir-106a-3p ; hsa-mir-4684-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-3913-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-1255b-2-3p ; hsa-mir-2467-3p ; hsa-mir-4257 ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-5692a ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-7641 ; hsa-mir-3622b-5p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-5197-5p ; hsa-mir-2681-5p ; hsa-mir-5591-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-1248 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-5088-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6828-5p ; hsa-mir-383-3p ; hsa-mir-9500 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6873-3p ; hsa-mir-873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-5586-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-642b-5p ; hsa-mir-6815-3p ; hsa-mir-2115-5p ; hsa-mir-1266-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-1910-3p ; hsa-mir-6511a-5p

Nearest miRNA

hsa-mir-210/Upstream/1401833; hsa-let-7a-2/Downstream/453642;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/42328, chr11-CpG: 66/Downstream/45566

Upstream sequence

TCTGATATCTCTTGAAATCTTT

Junction sequence