hsa-mir-3691-3p _LIHC.png
UTRN _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006710
Fusion event
HBV-UTRN integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh38
Start
144643887 (Hg38)
End
144643887 (Hg38)
Location type
Intron
Target gene
UTRN
miRNAs that regulate target gene
hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-455-3p ; hsa-mir-505-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-let-7b-5p ; hsa-mir-3136-3p ; hsa-mir-4313 ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-1915-5p ; hsa-mir-6793-3p ; hsa-mir-4714-3p ; hsa-mir-203b-5p ; hsa-mir-3691-3p ; hsa-mir-556-3p ; hsa-mir-6718-5p ; hsa-mir-6801-5p
Nearest miRNA
hsa-mir-10398/Upstream/3960004; hsa-mir-1202/Downstream/6458788;
Nearest TSS
ENST00000381078/Upstream/60677; ENST00000367525/Downstream/15957;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/356743, chr6-CpG: 132/Downstream/1090873
Downstream sequence
TTTTTTTAAAATTGCTTTA
Junction sequence
CCAGCACCATGCAACTTGAACTTTTTTTTTTAAAATTGCTTTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate