Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006717
Fusion event
HBV-JAM3 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
q25
Reference genome
Start
End
134107675 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-let-7a-2/Upstream/209094;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/37889, chr11-CpG: 48/Downstream/17139
Upstream sequence
agggtgaaatctacagcatgaaagacctatattcgaaaagaagaaaggtctgaaatcagtgagttcatctactttatgaaattagaaaaagagcctgggc
Downstream sequence
aacatagcaagtccccatctctacaaaaaatttaaaaatgagccaggcatggtggtagatgcctgtagtcccagctacttgggacatcggggcaggagaa
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.