VISDB Viral Integration Site DataBase

VIS ID

TVIS10006722

Fusion event

HBV-CAMTA1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1676

Integrated sequence

TGCGACGTGCAGAGGTGAAGCGAAGTGCACACGGTCCGGCAGATGAGAAGGCACAGACGGGGAGTCCGCGTAAAGAGAGGTGCGCCCCGTGGTCGGTCGG| |AACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGC

Chromosome

chr1

Cytoband

p36.31

Reference genome

Start

End

6882297 (Hg38)

Location type

Intron

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p

Nearest miRNA

hsa-mir-12136/Upstream/452401; hsa-mir-101-1/Downstream/1984205;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/95991, chr1-CpG: 23/Downstream/79644

Nearest cancer related gene

CAMTA1(TSG, No orient, 0)

Upstream sequence

AACAGGGAGCATATGGCCTGT

Junction sequence