VISDB Viral Integration Site DataBase

VIS ID

TVIS10006724

Fusion event

HBV-MAP2 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1704

Integrated sequence

ACACGGTCCGGCAGATGAGAAGGCACAGACGGGGAGTCCGCGTAAAGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGA| |GTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAG

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

209661342 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-382-3p ; hsa-mir-1193 ; hsa-mir-147a ; hsa-mir-3650 ; hsa-mir-370-5p ; hsa-mir-3911 ; hsa-mir-3974 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-493-3p ; hsa-mir-5703 ; hsa-mir-574-5p ; hsa-mir-644a ; hsa-mir-6770-5p ; hsa-mir-6867-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-10b/Upstream/1906461; hsa-mir-1244-1/Downstream/2764921;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/237268, chr2-CpG: 57/Downstream/110278

Downstream sequence

CCACACCAACCCCCCAAG

Junction sequence