VISDB Viral Integration Site DataBase

VIS ID

TVIS10006733

Fusion event

HBV-ELOVL5 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1741

Integrated sequence

CCGCGTAAAGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATT| |CAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACA

Chromosome

chr6

Cytoband

p12.1

Reference genome

Start

End

53339039 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-324-5p ; hsa-mir-19b-3p ; hsa-mir-3145-3p ; hsa-mir-4260 ; hsa-mir-1227-5p ; hsa-mir-486-3p ; hsa-mir-646 ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-3667-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-548aw ; hsa-mir-9-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6835-3p ; hsa-mir-4422 ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-19a-3p ; hsa-mir-4699-3p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-329-5p ; hsa-mir-4748 ; hsa-mir-5683 ; hsa-mir-4464 ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p

Nearest miRNA

hsa-mir-10398/Upstream/61968; hsa-mir-10524/Downstream/4051093;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/273079, chr6-CpG: 127/Downstream/8780

Upstream sequence

CACATTTCTTTTTTAAAA

Junction sequence