VISDB Viral Integration Site DataBase

VIS ID

TVIS10006738

Fusion event

HBV-MED26 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1803

Integrated sequence

AGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTA| |GCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAG

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

16582352 (Hg38)

Location type

Intron

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-320a ; hsa-mir-8055 ; hsa-mir-1304-5p ; hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-513b-5p ; hsa-mir-6077 ; hsa-mir-2052 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4719 ; hsa-mir-9500

Nearest miRNA

hsa-mir-10395/Upstream/1132744; hsa-let-7e/Downstream/1699725;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/9371, chr19-CpG: 143/Downstream/45152

Upstream sequence

CCAGGCCCTTTGCAGGGATT

Junction sequence