ATP10B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006743
Fusion event
HBV-ATP10B integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1829
Integrated sequence
GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh38
Start
160700946 (Hg38)
End
160700946 (Hg38)
Location type
Intron
Target gene
ATP10B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10397/Upstream/215496; hsa-mir-103a-1/Downstream/7464899;
Nearest TSS
ENST00000502646/Upstream/15561; ENST00000518888/Downstream/151208;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/278840, chr5-CpG: 68/Downstream/846740
Upstream sequence
TGCCCAAGACTTTGATT
Junction sequence
TGCCCAAGACTTTGATTGAACTTGAAAAAGTTGCATGGTGTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate