VISDB Viral Integration Site DataBase

VIS ID

TVIS10006768

Fusion event

HBV-CD2AP integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1828

Integrated sequence

CGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTT| |GCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGA

Chromosome

chr6

Cytoband

p12.3

Reference genome

Start

End

47571362 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-128-3p ; hsa-mir-124-3p ; hsa-mir-30b-5p ; hsa-mir-1-3p ; hsa-mir-19b-3p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-188-5p ; hsa-mir-491-3p ; hsa-mir-586 ; hsa-mir-548n ; hsa-mir-3148 ; hsa-mir-3688-3p ; hsa-mir-6073 ; hsa-mir-6083 ; hsa-mir-6866-3p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-891b ; hsa-mir-4517 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3606-5p ; hsa-mir-3607-3p ; hsa-mir-548ao-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-551b-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-6074 ; hsa-mir-625-3p ; hsa-mir-3182 ; hsa-mir-141-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428 ; hsa-mir-6124 ; hsa-mir-921 ; hsa-mir-6804-3p ; hsa-mir-3065-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-4477a ; hsa-mir-103b ; hsa-mir-664a-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4797-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10398/Upstream/2373592; hsa-mir-10524/Downstream/4572987;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/93007, chr6-CpG: 44/Downstream/497039

Upstream sequence

CAAAAAGTAGACTGCACAGG

Junction sequence