hsa-mir-4529-3p _LIHC.png
MGAT5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006775
Fusion event
HBV-MGAT5 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1803
Integrated sequence
AGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTA| |GCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAG
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
End
134257821 (Hg38)
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/130629; hsa-mir-10b/Downstream/599999;
Downstream sequence
ATTAGTTTGCAGTCTCTTTT
Junction sequence
CTGTAGGCATAAATTGGTCTTGCTGATTAGTTTGCAGTCTCTTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate