VISDB Viral Integration Site DataBase

VIS ID

TVIS10006777

Fusion event

HBV-ERP44 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1811

Integrated sequence

GCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCAT| |GGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCG

Chromosome

chr9

Cytoband

q31.1

Reference genome

Start

End

100084919 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-30a-5p ; hsa-mir-8081 ; hsa-mir-374a-3p ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-361-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-3617-3p ; hsa-mir-6838-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4503 ; hsa-mir-5701 ; hsa-mir-27b-5p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-100-3p ; hsa-mir-4795-3p ; hsa-mir-587 ; hsa-mir-584-5p ; hsa-mir-501-5p ; hsa-mir-561-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-552-5p ; hsa-mir-136-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6740-3p ; hsa-mir-942-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-548p

Nearest miRNA

hsa-let-7a-1/Upstream/1855702; hsa-mir-12126/Downstream/6516009;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/177728, chr9-CpG: 69/Downstream/13574

Downstream sequence

AAAAAGCTAAGGCAACA

Junction sequence