Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006779
Fusion event
HBV-BICC1 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
Start
End
58643783 (Hg38)
Location type
Intron
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-3912-5p ; hsa-mir-4716-5p ; hsa-mir-6834-3p ; hsa-mir-3668 ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-6875-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4778-3p ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4511 ; hsa-mir-548b-3p
Nearest miRNA
hsa-mir-1265/Upstream/1339224; hsa-mir-107/Downstream/4729174;
Nearest CpG islands
Upstream sequence
aggaggaacaataagatttgtacacaacacacaccaacaggatctgagcttcctccatggccacagcagaaaaggaagcctgaccatttaggagaaccac
Downstream sequence
aaggtccatgagattaaaaataaattagtggctctggaagatcacaggctttattgctacaggaaccttggaggagcttctgttaattacctaatgagac
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.