Basic Information
VIS ID
TVIS10006780
Fusion event
HBV-chr17 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1752
Integrated sequence
GAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACG| |GGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATC
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh38
Start
54406378 (Hg38)
End
54406378 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/3637648; hsa-mir-1250/Downstream/2484892;
Nearest TSS
ENST00000595228/Upstream/583477; ENST00000574744/Downstream/493009;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/648839, chr17-CpG: 42/Downstream/494127
Nearby gene
KIF2B(-581166) ; TOM1L1(+494312) ;
Upstream sequence
AAAGATTAATAGTGGTGATT
Junction sequence
AAAGATTAATAGTGGTGATTGATCCTCCCCCAACTCCTCCCA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate