VISDB Viral Integration Site DataBase

VIS ID

TVIS10006784

Fusion event

HBV-NCAM2 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1783

Integrated sequence

GACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGAT| |CCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTG

Chromosome

chr21

Cytoband

q21.1

Reference genome

Start

End

21342520 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-6885-3p ; hsa-mir-1273e ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-3658 ; hsa-mir-6505-5p ; hsa-mir-3653-3p ; hsa-mir-4790-3p ; hsa-mir-6507-5p ; hsa-mir-2116-5p ; hsa-mir-22-5p ; hsa-mir-26b-3p ; hsa-mir-3622a-5p ; hsa-mir-4423-3p ; hsa-mir-4652-3p ; hsa-mir-4677-5p ; hsa-mir-4778-5p ; hsa-mir-5582-5p ; hsa-mir-627-3p ; hsa-mir-6806-5p

Nearest miRNA

hsa-let-7c/Upstream/2656356; hsa-mir-155/Downstream/1736764;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/344275, chr21-CpG: 28/Downstream/4019274

Upstream sequence

AGCCTCTCCAGTATGGCT

Junction sequence