VISDB Viral Integration Site DataBase

VIS ID

TVIS10006787

Fusion event

HBV-NTN1 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1843

Integrated sequence

GCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAAC| |AGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAGGAGCCGAAAAGGTT

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

9077821 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-1296-5p ; hsa-mir-423-3p ; hsa-mir-486-3p ; hsa-mir-6780b-5p ; hsa-mir-4271 ; hsa-mir-4725-3p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-2467-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6805-5p ; hsa-mir-6783-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-6873-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4749-3p ; hsa-mir-4313 ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-6887-3p ; hsa-mir-361-3p ; hsa-mir-6769a-3p

Nearest miRNA

hsa-mir-1253/Upstream/890817; hsa-mir-10226/Downstream/3004078;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/54218, chr17-CpG: 23/Downstream/37858

Downstream sequence

CTAAGCGGATGAGGCAGG

Junction sequence