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VISDB
Viral Integration Site DataBase
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TVIS10006792
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006792
Fusion event
HBV-MPP2 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh38
Start
43882099 (Hg38)
End
43882099 (Hg38)
Location type
Intron
Target gene
MPP2
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-128-3p
;
hsa-mir-30a-5p
;
hsa-mir-1229-3p
;
hsa-mir-296-3p
;
hsa-mir-615-3p
;
hsa-mir-484
;
hsa-mir-196a-5p
;
hsa-mir-8064
;
hsa-mir-642b-3p
;
hsa-mir-642a-3p
;
hsa-mir-6730-3p
;
hsa-mir-6767-3p
;
hsa-mir-8485
;
hsa-mir-1246
;
hsa-mir-1289
;
hsa-mir-146a-5p
;
hsa-mir-146b-5p
;
hsa-mir-152-5p
;
hsa-mir-198
;
hsa-mir-3134
;
hsa-mir-3150b-3p
;
hsa-mir-342-5p
;
hsa-mir-4314
;
hsa-mir-4320
;
hsa-mir-4433a-3p
;
hsa-mir-4435
;
hsa-mir-4455
;
hsa-mir-4459
;
hsa-mir-4525
;
hsa-mir-455-3p
;
hsa-mir-4651
;
hsa-mir-4664-5p
;
hsa-mir-4716-3p
;
hsa-mir-4768-3p
;
hsa-mir-4779
;
hsa-mir-4784
;
hsa-mir-5010-5p
;
hsa-mir-506-5p
;
hsa-mir-520a-5p
;
hsa-mir-525-5p
;
hsa-mir-582-3p
;
hsa-mir-608
;
hsa-mir-609
;
hsa-mir-644a
;
hsa-mir-663b
;
hsa-mir-665
;
hsa-mir-6737-5p
;
hsa-mir-6747-5p
;
hsa-mir-6748-5p
;
hsa-mir-6756-5p
;
hsa-mir-6766-5p
;
hsa-mir-6769a-5p
;
hsa-mir-6769b-5p
;
hsa-mir-6772-5p
;
hsa-mir-6776-5p
;
hsa-mir-6793-5p
;
hsa-mir-6794-5p
;
hsa-mir-6812-5p
;
hsa-mir-6819-5p
;
hsa-mir-6847-5p
;
hsa-mir-6861-5p
;
hsa-mir-6890-5p
;
hsa-mir-6891-5p
;
hsa-mir-7108-5p
;
hsa-mir-7153-5p
Nearest miRNA
hsa-mir-1180/Upstream/437214; hsa-mir-10226/Downstream/325672;
Nearest TSS
ENST00000595228/Upstream/26823;
ENST00000588043/Downstream/18499;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/48649
,
chr17-CpG: 20/Downstream/18455
Upstream sequence
CGCACAAACGTGAAGAACGCTGACCATAATGCAGGCGCTCTCTCATACACTTGTACCCCAGGCTGTGGCTGCGTGCATAATACCAGCCAATGTGGGAGCA
Downstream sequence
TGTGCAGGTGCAGCAGCGGCAGAGGCCTGTCGGCGGCTGCGGTCAGCTGCCCCTGGGCTGCAGGTCCCACCCCCATCTTCCCTGGAGGAAACCAGTAGGA
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Sample Information
×
Sample name
24
Sample type
Tumor
Age
26
Gender
Female
CpG Island Information
×
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