MPP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006792
Fusion event
HBV-MPP2 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
End
43882099 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-1180/Upstream/437214; hsa-mir-10226/Downstream/325672;
Upstream sequence
CGCACAAACGTGAAGAACGCTGACCATAATGCAGGCGCTCTCTCATACACTTGTACCCCAGGCTGTGGCTGCGTGCATAATACCAGCCAATGTGGGAGCA
Downstream sequence
TGTGCAGGTGCAGCAGCGGCAGAGGCCTGTCGGCGGCTGCGGTCAGCTGCCCCTGGGCTGCAGGTCCCACCCCCATCTTCCCTGGAGGAAACCAGTAGGA
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate