Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006797
Fusion event
HBV-ARSF integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1810
Integrated sequence
AGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCA| |TGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCC
Host Sequence
Chromosome
chrX
Cytoband
p22.33
Reference genome
Start
End
3084718 (Hg38)
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3690-1/Upstream/475464; hsa-let-7f-2/Downstream/3299188;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/155248, chrX-CpG: 20/Downstream/225609
Downstream sequence
AAAAGGACCTAGATA
Junction sequence
AGGCATAAATTGGTGTGCGAAAAAGGACCTAGATA
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.