hsa-mir-4742-3p _LIHC.png
UNC80 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006798
Fusion event
HBV-UNC80 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1813
Integrated sequence
GACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGG| |AAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCA
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh38
Start
209999103 (Hg38)
End
209999103 (Hg38)
Location type
Exon
Target gene
UNC80
miRNAs that regulate target gene
hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-4999-5p ; hsa-mir-4742-3p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-889-5p ; hsa-mir-888-5p
Nearest miRNA
hsa-mir-10b/Upstream/2244222; hsa-mir-1244-1/Downstream/2427160;
Nearest TSS
ENST00000437798/Upstream/38172; ENST00000438191/Downstream/3462;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/189578, chr2-CpG: 48/Downstream/3345
Upstream sequence
TAGCCATTTTATAGGTTAAA
Junction sequence
TAGCCATTTTATAGGTTAAATGCTGGNGCGCAGACCAATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate