FGF14 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006804
Fusion event
HBV-FGF14 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1806
Integrated sequence
CCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCA| |GCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAG
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
End
102146298 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/100294; hsa-mir-1267/Downstream/5384873;
Downstream sequence
TGGTGGCTGACAAATTATTTT
Junction sequence
AGGCATAAATTGGTCTGCGCTGGTGGCTGACAAATTATTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
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