Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006805
Fusion event
HBV-LOC256880 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1829
Integrated sequence
GTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTG| |CGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGAG
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
Start
End
100034797 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/1037337; hsa-mir-1243/Downstream/1205998;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/83960, chr4-CpG: 33/Downstream/155192
Upstream sequence
TGTACAATAGTCAGGGATGT
Junction sequence
TGTACAATAGTCAGGGATGTTGAAAAAGTTGCATGGTGCT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.