VISDB Viral Integration Site DataBase

VIS ID

TVIS10006809

Fusion event

HBV-STXBP4 integration

Validated

Yes

Detection method

invPCR +Sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

Start

1821

Integrated sequence

GAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATG| |TATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGAT

Chromosome

chr17

Cytoband

q22

Reference genome

Start

End

55013573 (Hg38)

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-7702 ; hsa-mir-151a-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-4448 ; hsa-mir-3670 ; hsa-mir-556-5p

Nearest miRNA

hsa-mir-10226/Upstream/4244843; hsa-mir-1250/Downstream/1877697;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/44566, chr17-CpG: 65/Downstream/224684

Upstream sequence

GTGCCTTTGGATAATTTTAGTCC

Junction sequence